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chromatin immunoprecipitation followed by microarray hybridization (chip-chip) assay protocol  (NimbleGen Systems GmbH)

 
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    NimbleGen Systems GmbH chromatin immunoprecipitation followed by microarray hybridization (chip-chip) assay protocol
    Chromatin Immunoprecipitation Followed By Microarray Hybridization (Chip Chip) Assay Protocol, supplied by NimbleGen Systems GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+hybridization+protocols/chromatin+immunoprecipitation+followed+by+microarray+hybridization++chip+chip++assay+protocol/pm22934838-47-9-25
    Average 90 stars, based on 1 article reviews
    chromatin immunoprecipitation followed by microarray hybridization (chip-chip) assay protocol - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Hybridization:

    Article Title: Acetylation of histone H3 at lysine 64 regulates nucleosome dynamics and facilitates transcription
    Article Snippet: Microarray design, hybridization and analysis ChIP samples were hybridized to custom tiling microarrays (Lienert et al., 2011) representing all wellannotated promoters and the complete chromosome 19 with an average probe spacing of 100 bp (NimbleGen Systems Inc., Madison, WI). .. Sample labelling, hybridization and array scanning were performed according to the manufacturer’s protocols using a MAUI hybridization station and a NimbleGen MS200 slide scanner in combination with NimbleScan software (NimbleGen Systems Inc.). ..

    Software:

    Article Title: Acetylation of histone H3 at lysine 64 regulates nucleosome dynamics and facilitates transcription
    Article Snippet: Microarray design, hybridization and analysis ChIP samples were hybridized to custom tiling microarrays (Lienert et al., 2011) representing all wellannotated promoters and the complete chromosome 19 with an average probe spacing of 100 bp (NimbleGen Systems Inc., Madison, WI). .. Sample labelling, hybridization and array scanning were performed according to the manufacturer’s protocols using a MAUI hybridization station and a NimbleGen MS200 slide scanner in combination with NimbleScan software (NimbleGen Systems Inc.). ..



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    Image Search Results


    (A) Control and IFIT1-depleted THP1 cells were stimulated with 100 ng/mL LPS for 1, 2, 4, 6, and 24 hr, and transcriptional responses were measured by microarray. The upper heatmap shows genes with substantial expression increases in WT cells compared to their expression level in IFIT1-depleted cells. The lower heatmap shows the sum of the expression difference between WT and IFIT1-depleted cells across the time course . (B and C) The network connections of genes that showed (B) enhanced expression (group 1; ) or (C) reduced expression (group 2; ) in IFIT1-depleted cells, as determined by IPA. (D) Transfection of siRNA into IFIT1 shRNA-expressing cells sustains a stable suppression of IFIT1 induction in response to 100 ng/mL LPS. (E and F) Control and IFIT1-depleted THP1 cells (E) or human primary macrophages (F) were stimulated with 100 ng/mL LPS, and secreted IFN-β protein was measured by ELISA. Data are representative of two (A) or three (D–F) independent experiments. Data in (D)–(F) are expressed as mean SD; *p < 0.05, **p < 0.01 (two-way ANOVA followed by Sidak’s multiple comparison test). See also and , , and .

    Journal: Cell reports

    Article Title: IFIT1 Exerts Opposing Regulatory Effects on the Inflammatory and Interferon Gene Programs in LPS-Activated Human Macrophages

    doi: 10.1016/j.celrep.2018.09.002

    Figure Lengend Snippet: (A) Control and IFIT1-depleted THP1 cells were stimulated with 100 ng/mL LPS for 1, 2, 4, 6, and 24 hr, and transcriptional responses were measured by microarray. The upper heatmap shows genes with substantial expression increases in WT cells compared to their expression level in IFIT1-depleted cells. The lower heatmap shows the sum of the expression difference between WT and IFIT1-depleted cells across the time course . (B and C) The network connections of genes that showed (B) enhanced expression (group 1; ) or (C) reduced expression (group 2; ) in IFIT1-depleted cells, as determined by IPA. (D) Transfection of siRNA into IFIT1 shRNA-expressing cells sustains a stable suppression of IFIT1 induction in response to 100 ng/mL LPS. (E and F) Control and IFIT1-depleted THP1 cells (E) or human primary macrophages (F) were stimulated with 100 ng/mL LPS, and secreted IFN-β protein was measured by ELISA. Data are representative of two (A) or three (D–F) independent experiments. Data in (D)–(F) are expressed as mean SD; *p < 0.05, **p < 0.01 (two-way ANOVA followed by Sidak’s multiple comparison test). See also and , , and .

    Article Snippet: Each condition was represented by two biological replicates. cRNA amplification and labeling were performed using the Illumina TotalPrep RNA Amplification Kit (Ambion), microarray hybridization and scanning protocols followed standard Illumina protocols.

    Techniques: Microarray, Expressing, Transfection, shRNA, Enzyme-linked Immunosorbent Assay

    KEY RESOURCES TABLE

    Journal: Cell reports

    Article Title: IFIT1 Exerts Opposing Regulatory Effects on the Inflammatory and Interferon Gene Programs in LPS-Activated Human Macrophages

    doi: 10.1016/j.celrep.2018.09.002

    Figure Lengend Snippet: KEY RESOURCES TABLE

    Article Snippet: Each condition was represented by two biological replicates. cRNA amplification and labeling were performed using the Illumina TotalPrep RNA Amplification Kit (Ambion), microarray hybridization and scanning protocols followed standard Illumina protocols.

    Techniques: Recombinant, Microarray, shRNA, Software